Hello Holger,
very interesting question! I donât really know about standards for bluerays.
Because stereoscopy is pretty new there arenât common standards yet, I think.
I just heard of the Stereoscopic DCP with JPEG 2000.
This is a standard for digital cinema distribution, but maybe it will
also be of importance for a stereoscopic blueray.
Checkout these links for more information:
http://www.3dtv.at/Products/Jpeg2000Decoder/Index_de.aspx
requirements for a stereoscopic DCP:
http://www.dcimovies.com/DCI_Stereoscopic_DC_Addendum.pdf
Fraunhofer institute creates DCPs:
http://www.iis.fraunhofer.de/bf/bv/cinema/dcpplayer.jsp
For a private use on home cinema systems, you will have to match the specific format of your 3D TV. It really depends on the method your TV uses. But most commonly you will provide your TV with two streams and the TV itself calculates the rest.
There a three different methods for providing the two streams:
- two separate files; sometimes even separate sound
- stacked version, side by side
- stacked version, over under format
These are the methods I came in touch with, so try and see which one works.
I donât know any standards yet, so please tell me if you find out something!
Thank you!
You can also checkout and download the different versions of my student project âBROKENâ:
http://www.svoigt.net/index.php/broken/20-broken
Maybe saving you some render time and After Effects trouble 
best regards and good luck,
Stefan Voigt